IL_3CXC_048

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUGGAAG*UGGAC

Length

13 nucleotides

Bulged bases

3CXC|1|0|G|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_048 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.044

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

3CXC|1|0|G|1312
3CXC|1|0|A|1313
3CXC|1|0|U|1314
3CXC|1|0|G|1315
3CXC|1|0|G|1316
3CXC|1|0|A|1317
3CXC|1|0|A|1318
3CXC|1|0|G|1319
*
3CXC|1|0|U|1338
3CXC|1|0|G|1339
3CXC|1|0|G|1340
3CXC|1|0|A|1341
3CXC|1|0|C|1342

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain X

RIBOSOMAL PROTEIN L32E