IL_3CXC_090

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

3CXC|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_090 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.2562

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

3CXC|1|0|C|2672
3CXC|1|0|U|2673
3CXC|1|0|G|2674
3CXC|1|0|A|2675
3CXC|1|0|C|2676
*
3CXC|1|0|G|2809
3CXC|1|0|G|2810
3CXC|1|0|A|2811
3CXC|1|0|A|2812
3CXC|1|0|A|2813
3CXC|1|0|A|2814
3CXC|1|0|G|2815
3CXC|1|0|A|2816
3CXC|1|0|G|2817

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain I

RIBOSOMAL PROTEIN L13