IL_3DEG_002

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

3DEG|1|G|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DEG_002 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1613

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

3DEG|1|G|C|1043
3DEG|1|G|C|1044
3DEG|1|G|C|1045
3DEG|1|G|A|1046
3DEG|1|G|G|1047
3DEG|1|G|A|1048
3DEG|1|G|C|1049
3DEG|1|G|A|1050
3DEG|1|G|G|1051
*
3DEG|1|G|U|1108
3DEG|1|G|C|1109
3DEG|1|G|G|1110
3DEG|1|G|A|1111
3DEG|1|G|G|1112

Current chains

Chain G

50S RNA helix 42-44

Nearby chains