IL_3DEG_005

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DEG_005 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1181

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3DEG|1|I|C|2652
3DEG|1|I|U|2653
3DEG|1|I|A|2654
3DEG|1|I|G|2655
3DEG|1|I|U|2656
3DEG|1|I|A|2657
3DEG|1|I|C|2658
*
3DEG|1|I|G|2663
3DEG|1|I|G|2664
3DEG|1|I|A|2665
3DEG|1|I|C|2666
3DEG|1|I|C|2667
3DEG|1|I|G|2668

Current chains

Chain I

50S RNA helix 95

Nearby chains

Chain C

GTP-binding protein lepA