IL_3EOG_006

3D structure

PDB id

3EOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystallization showing exon recognition by a group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

AUAGAGG*UAAAU*U

Length

13 nucleotides

Bulged bases

3EOG|1|A|A|223

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3EOG_006 not in the Motif Atlas

Geometric match to IL_3IGI_006

Geometric discrepancy: 0.3317

The information below is about IL_3IGI_006

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_77045.1

Basepair signature

cWW-L-tSW-L-tHW-cWW-L

Number of instances in this motif group

1

Unit IDs

3EOG|1|A|A|149
3EOG|1|A|U|150
3EOG|1|A|A|151
3EOG|1|A|G|153
3EOG|1|A|A|154
3EOG|1|A|G|155
3EOG|1|A|G|156
*
3EOG|1|A|U|221
3EOG|1|A|A|222
3EOG|1|A|A|223
3EOG|1|A|A|224
3EOG|1|A|U|225
*
3EOG|1|A|U|225

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-R(*UP*UP*AP*UP*UP*A)-3'