IL_3EOG_008

3D structure

PDB id

3EOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystallization showing exon recognition by a group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UG*CUUUCUGCCAAG*G

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3EOG_008 not in the Motif Atlas

Geometric match to IL_3IGI_008

Geometric discrepancy: 0.1364

The information below is about IL_3IGI_008

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

IL_53787.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

3EOG|1|A|U|168
3EOG|1|A|G|169
*
3EOG|1|A|C|197
3EOG|1|A|U|198
3EOG|1|A|U|199
3EOG|1|A|U|200
3EOG|1|A|C|201
3EOG|1|A|U|202
3EOG|1|A|G|203
3EOG|1|A|C|204
3EOG|1|A|C|205
3EOG|1|A|A|206
3EOG|1|A|A|208
3EOG|1|A|G|209
*
3EOG|1|A|G|209

Current chains

Chain A

Group IIC intron

Nearby chains