IL_3G6E_089

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

3G6E|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G6E_089 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.2586

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

3G6E|1|0|C|2672
3G6E|1|0|U|2673
3G6E|1|0|G|2674
3G6E|1|0|A|2675
3G6E|1|0|C|2676
*
3G6E|1|0|G|2809
3G6E|1|0|G|2810
3G6E|1|0|A|2811
3G6E|1|0|A|2812
3G6E|1|0|A|2813
3G6E|1|0|A|2814
3G6E|1|0|G|2815
3G6E|1|0|A|2816
3G6E|1|0|G|2817

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P