IL_3GX5_002

3D structure

PDB id

3GX5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGGAG*CGACGAAA

Length

13 nucleotides

Bulged bases

3GX5|1|A|C|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02471.1

Basepair signature

cWW-tSS-L-tSH-tSS-tHS-tHS-cWW

Number of instances in this motif group

41

Unit IDs

3GX5|1|A|U|17
3GX5|1|A|G|18
3GX5|1|A|G|19
3GX5|1|A|A|20
3GX5|1|A|G|21
*
3GX5|1|A|C|31
3GX5|1|A|G|32
3GX5|1|A|A|33
3GX5|1|A|C|34
3GX5|1|A|G|35
3GX5|1|A|A|36
3GX5|1|A|A|37
3GX5|1|A|A|38

Current chains

Chain A

RNA (94-MER)

Nearby chains