3GX5 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3GX5_001 | 1/A/23:29 | Pseudoknot geometry | geometric HL_4AOB_001 HL_30680.4 | |
| HL_3GX5_002 | 1/A/49:54 | GNRA | geometric HL_5B2T_001 HL_34789.1 | |
| HL_3GX5_003 | 1/A/73:78 | GNRA | geometric HL_4AOB_003 HL_34789.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3GX5_001 | 1/A/13:15, 1/A/40:41 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_3GX5_002 | 1/A/17:21, 1/A/31:38 | Kink-turn | geometric IL_5G4T_002 NA | |
| IL_3GX5_003 | 1/A/44:47, 1/A/56:58 | Major groove platform with extra pair | geometric IL_4OQU_001 IL_15698.4 | |
| IL_3GX5_004 | 1/A/64:69, 1/A/82:85 | Pseudoknot | geometric IL_5FJC_004 IL_69145.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3GX5_001 | 1/A/8:13, 1/A/41:42, 1/A/60:64, 1/A/85:86 | SAM-I riboswitch junction | homologous J4_5FJC_001 J4_40439.2 |
Problematic loops
No problematic loops
Coloring options: