IL_3I55_047

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GAUGGAAG*UGGAC

Length

13 nucleotides

Bulged bases

3I55|1|0|G|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3I55_047 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.0413

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

3I55|1|0|G|1312
3I55|1|0|A|1313
3I55|1|0|U|1314
3I55|1|0|G|1315
3I55|1|0|G|1316
3I55|1|0|A|1317
3I55|1|0|A|1318
3I55|1|0|G|1319
*
3I55|1|0|U|1338
3I55|1|0|G|1339
3I55|1|0|G|1340
3I55|1|0|A|1341
3I55|1|0|C|1342

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain Y

50S ribosomal protein L32e