IL_3IQP_002

3D structure

PDB id

3IQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SAM-I riboswitch from T. tencongensis variant A94G apo form

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGAG*CGAUGAAA

Length

13 nucleotides

Bulged bases

3IQP|1|A|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IQP_002 not in the Motif Atlas

Geometric match to IL_5FJC_002

Geometric discrepancy: 0.1185

The information below is about IL_5FJC_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

3IQP|1|A|U|17
3IQP|1|A|G|18
3IQP|1|A|G|19
3IQP|1|A|A|20
3IQP|1|A|G|21
*
3IQP|1|A|C|31
3IQP|1|A|G|32
3IQP|1|A|A|33
3IQP|1|A|U|34
3IQP|1|A|G|35
3IQP|1|A|A|36
3IQP|1|A|A|37
3IQP|1|A|A|38

Current chains

Chain A

SAM-I riboswitch

Nearby chains