IL_3IWN_008

3D structure

PDB id

3IWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of a bacterial c-di-GMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGC*GUAGCG

Length

10 nucleotides

Bulged bases

3IWN|1|B|G|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IWN_008 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2782

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3IWN|1|B|C|145
3IWN|1|B|G|146
3IWN|1|B|G|147
3IWN|1|B|C|148
*
3IWN|1|B|G|175
3IWN|1|B|U|176
3IWN|1|B|A|177
3IWN|1|B|G|178
3IWN|1|B|C|179
3IWN|1|B|G|180

Current chains

Chain B

C-di-GMP riboswitch

Nearby chains