IL_3IWN_010

3D structure

PDB id

3IWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of a bacterial c-di-GMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*UAGC

Length

6 nucleotides

Bulged bases

3IWN|1|B|A|177, 3IWN|1|B|G|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IWN_010 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2988

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

3IWN|1|B|G|146
3IWN|1|B|G|147
*
3IWN|1|B|U|176
3IWN|1|B|A|177
3IWN|1|B|G|178
3IWN|1|B|C|179

Current chains

Chain B

C-di-GMP riboswitch

Nearby chains