IL_3IWN_011

3D structure

PDB id

3IWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of a bacterial c-di-GMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AAACG*CGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IWN_011 not in the Motif Atlas

Geometric match to IL_4LFB_066

Geometric discrepancy: 0.2962

The information below is about IL_4LFB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.1

Basepair signature

cWW-cWS-L-R-cWW-L

Number of instances in this motif group

3

Unit IDs

3IWN|1|B|A|151
3IWN|1|B|A|152
3IWN|1|B|A|153
3IWN|1|B|C|154
3IWN|1|B|G|155
*
3IWN|1|B|C|170
3IWN|1|B|G|171
3IWN|1|B|U|172

Current chains

Chain B

C-di-GMP riboswitch

Nearby chains

Chain D

U1 small nuclear ribonucleoprotein A