IL_3J0L_001
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J0L_001 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1532
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
3J0L|1|a|A|543
3J0L|1|a|G|544
3J0L|1|a|G|545
3J0L|1|a|G|546
3J0L|1|a|C|547
3J0L|1|a|A|548
3J0L|1|a|A|549
3J0L|1|a|G|550
*
3J0L|1|a|C|581
3J0L|1|a|U|582
Current chains
- Chain a
- 40S ribosomal RNA fragment
Nearby chains
- Chain X
- Ribosomal protein S30
Coloring options: