IL_3J0L_009
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CGC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 3J0L|1|h|A|1709
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J0L_009 not in the Motif Atlas
- Geometric match to IL_3TD0_005
- Geometric discrepancy: 0.1255
- The information below is about IL_3TD0_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
3J0L|1|h|C|1616
3J0L|1|h|G|1617
3J0L|1|h|C|1618
*
3J0L|1|h|G|1707
3J0L|1|h|A|1708
3J0L|1|h|A|1709
3J0L|1|h|G|1710
Current chains
- Chain h
- 40S ribosomal RNA fragment
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- Ribosomal protein S23
- Chain Y
- Transfer RNA; tRNA
- Chain v
- mRNA fragment
- Chain y
- mRNA fragment
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