IL_3J0L_014

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UUCU*AAUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_014 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.248

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J0L|1|h|U|1646
3J0L|1|h|U|1647
3J0L|1|h|C|1648
3J0L|1|h|U|1649
*
3J0L|1|h|A|1676
3J0L|1|h|A|1677
3J0L|1|h|U|1678
3J0L|1|h|A|1679

Current chains

Chain h

40S ribosomal RNA fragment

Nearby chains