IL_3J0L_017

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_017 not in the Motif Atlas

Geometric match to IL_3R2D_002

Geometric discrepancy: 0.1994

The information below is about IL_3R2D_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

3J0L|1|1|A|1006
3J0L|1|1|U|1007
3J0L|1|1|U|1008
3J0L|1|1|A|1009
*
3J0L|1|1|U|1041
3J0L|1|1|U|1042
3J0L|1|1|C|1043
3J0L|1|1|U|1044

Current chains

Chain 1

60S ribosomal RNA fragment

Nearby chains

Chain J

Ribosomal protein L10

Chain Y

Transfer RNA; tRNA