IL_3J0L_021

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CGG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_021 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.3655

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

3J0L|1|1|C|1017
3J0L|1|1|G|1018
3J0L|1|1|G|1019
*
3J0L|1|1|U|1033
3J0L|1|1|U|1034
3J0L|1|1|G|1035

Current chains

Chain 1

60S ribosomal RNA fragment

Nearby chains

Chain Y

Transfer RNA; tRNA