IL_3J0L_024

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

3J0L|1|2|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_024 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.1097

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

3J0L|1|2|U|2200
3J0L|1|2|G|2201
*
3J0L|1|2|U|2241
3J0L|1|2|A|2242
3J0L|1|2|A|2243
3J0L|1|2|A|2244

Current chains

Chain 2

60S ribosomal RNA fragment

Nearby chains

Chain 8

60S ribosomal RNA fragment