IL_3J0L_027

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_027 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.1997

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

3J0L|1|2|U|2211
3J0L|1|2|C|2212
3J0L|1|2|A|2213
3J0L|1|2|A|2214
3J0L|1|2|A|2215
3J0L|1|2|G|2216
3J0L|1|2|U|2217
*
3J0L|1|2|A|2228
3J0L|1|2|A|2229
3J0L|1|2|C|2230
3J0L|1|2|C|2231
3J0L|1|2|A|2232
3J0L|1|2|A|2233
3J0L|1|2|G|2234

Current chains

Chain 2

60S ribosomal RNA fragment

Nearby chains

Chain W

Transfer RNA; tRNA