IL_3J0L_028
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- GG*CUC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J0L_028 not in the Motif Atlas
- Geometric match to IL_4C7O_002
- Geometric discrepancy: 0.3413
- The information below is about IL_4C7O_002
- Detailed Annotation
- Single stack bend
- Broad Annotation
- Single stack bend
- Motif group
- IL_90729.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 30
Unit IDs
3J0L|1|2|G|2250
3J0L|1|2|G|2251
*
3J0L|1|2|C|2265
3J0L|1|2|U|2266
3J0L|1|2|C|2267
Current chains
- Chain 2
- 60S ribosomal RNA fragment
Nearby chains
- Chain V
- Transfer RNA; tRNA
- Chain c
- 40S ribosomal RNA fragment
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