IL_3J0L_032

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

3J0L|1|7|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_032 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.2052

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

3J0L|1|7|G|2828
3J0L|1|7|U|2829
3J0L|1|7|G|2830
*
3J0L|1|7|U|2858
3J0L|1|7|U|2859
3J0L|1|7|U|2860
3J0L|1|7|U|2861
3J0L|1|7|U|2862

Current chains

Chain 7

60S ribosomal RNA fragment

Nearby chains

Chain J

Ribosomal protein L10

Chain Y

Transfer RNA; tRNA