IL_3J0L_039

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_039 not in the Motif Atlas

Geometric match to IL_4LFB_038

Geometric discrepancy: 0.1493

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

3J0L|1|G|C|1430
3J0L|1|G|A|1431
3J0L|1|G|C|1432
*
3J0L|1|g|G|1150
3J0L|1|g|G|1151

Current chains

Chain G

40S ribosomal RNA fragment

Chain g

40S ribosomal RNA fragment

Nearby chains

Chain S

Ribosomal protein S15

Chain V

Transfer RNA; tRNA