IL_3J0P_012

3D structure

PDB id

3J0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

UCUG*CCUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0P_012 not in the Motif Atlas

Geometric match to IL_4EYA_003

Geometric discrepancy: 0.1702

The information below is about IL_4EYA_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

3J0P|1|h|U|1635
3J0P|1|h|C|1636
3J0P|1|h|U|1637
3J0P|1|h|G|1638
*
3J0P|1|h|C|1687
3J0P|1|h|C|1688
3J0P|1|h|U|1689
3J0P|1|h|A|1690

Current chains

Chain h

40S ribosomal RNA fragment

Nearby chains