IL_3J0P_013

3D structure

PDB id

3J0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

UGAA*UAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0P_013 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.15

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3J0P|1|h|U|1640
3J0P|1|h|G|1641
3J0P|1|h|A|1642
3J0P|1|h|A|1643
*
3J0P|1|h|U|1682
3J0P|1|h|A|1683
3J0P|1|h|A|1684
3J0P|1|h|A|1685

Current chains

Chain h

40S ribosomal RNA fragment

Nearby chains