IL_3J0Q_016

3D structure

PDB id

3J0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

UGGAC*GAAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0Q_016 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1725

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3J0Q|1|h|U|1649
3J0Q|1|h|G|1650
3J0Q|1|h|G|1651
3J0Q|1|h|A|1652
3J0Q|1|h|C|1653
*
3J0Q|1|h|G|1672
3J0Q|1|h|A|1673
3J0Q|1|h|A|1674
3J0Q|1|h|A|1675
3J0Q|1|h|A|1676

Current chains

Chain h

40S ribosomal RNA fragment

Nearby chains