IL_3J28_014

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

3J28|1|N|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_014 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.3382

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

3J28|1|N|G|147
3J28|1|N|G|148
3J28|1|N|A|149
3J28|1|N|U|150
3J28|1|N|A|151
3J28|1|N|A|152
3J28|1|N|C|153
*
3J28|1|N|G|168
3J28|1|N|C|169
3J28|1|N|U|170
3J28|1|N|A|171
3J28|1|N|A|172
3J28|1|N|U|173
3J28|1|N|A|174
3J28|1|N|C|175

Current chains

Chain N

16S rRNA

Nearby chains