IL_3J28_017

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

3J28|1|N|U|244, 3J28|1|N|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_017 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.2167

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

3J28|1|N|G|242
3J28|1|N|A|243
3J28|1|N|U|244
3J28|1|N|U|245
3J28|1|N|A|246
3J28|1|N|G|247
*
3J28|1|N|C|277
3J28|1|N|G|278
3J28|1|N|A|279
3J28|1|N|C|280
3J28|1|N|G|281
3J28|1|N|A|282
3J28|1|N|U|283
3J28|1|N|C|284

Current chains

Chain N

16S rRNA

Nearby chains