IL_3J28_050

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

3J28|1|N|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_050 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.5501

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

3J28|1|N|G|933
3J28|1|N|C|934
3J28|1|N|A|935
*
3J28|1|N|U|1380
3J28|1|N|U|1381
3J28|1|N|C|1382
3J28|1|N|C|1383
3J28|1|N|C|1384

Current chains

Chain N

16S rRNA

Nearby chains