IL_3J28_093

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

3J28|1|N|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_093 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.2414

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

3J28|1|N|G|1124
3J28|1|N|U|1125
3J28|1|N|U|1126
3J28|1|N|G|1127
3J28|1|N|C|1128
*
3J28|1|N|G|1144
3J28|1|N|A|1145
3J28|1|N|A|1146
3J28|1|N|C|1147
3J28|1|N|U|1148
3J28|1|N|C|1149

Current chains

Chain N

16S rRNA

Nearby chains