IL_3J29_039

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

AGUC*GACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGUC,GACU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J29_039 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2469

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J29|1|N|A|655
3J29|1|N|G|656
3J29|1|N|U|657
3J29|1|N|C|658
*
3J29|1|N|G|748
3J29|1|N|A|749
3J29|1|N|C|750
3J29|1|N|U|751

Current chains

Chain N

16S rRNA

Nearby chains