3D structure

PDB id
3J29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
14 Å

Loop

Sequence
GAG*CUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J29_063 not in the Motif Atlas
Geometric match to IL_1L9A_003
Geometric discrepancy: 0.2293
The information below is about IL_1L9A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70707.3
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
70

Unit IDs

3J29|1|N|G|1253
3J29|1|N|A|1254
3J29|1|N|G|1255
*
3J29|1|N|C|1282
3J29|1|N|U|1283
3J29|1|N|C|1284

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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