IL_3J29_069

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J29_069 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.3981

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J29|1|N|G|1401
3J29|1|N|C|1402
3J29|1|N|C|1403
3J29|1|N|C|1404
*
3J29|1|N|G|1497
3J29|1|N|U|1498
3J29|1|N|A|1499
3J29|1|N|A|1500
3J29|1|N|C|1501

Current chains

Chain N

16S rRNA

Nearby chains