IL_3J29_094

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

3J29|1|N|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J29_094 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.3534

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

3J29|1|N|C|569
3J29|1|N|G|570
3J29|1|N|U|571
3J29|1|N|A|572
3J29|1|N|A|573
3J29|1|N|A|574
3J29|1|N|G|575
*
3J29|1|N|C|880
3J29|1|N|G|881

Current chains

Chain N

16S rRNA

Nearby chains