IL_3J2A_060

3D structure

PDB id

3J2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2A_060 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.293

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3J2A|1|N|C|1259
3J2A|1|N|G|1260
3J2A|1|N|A|1261
3J2A|1|N|C|1262
3J2A|1|N|C|1263
*
3J2A|1|N|G|1272
3J2A|1|N|C|1273
3J2A|1|N|A|1274
3J2A|1|N|A|1275
3J2A|1|N|G|1276

Current chains

Chain N

16S rRNA

Nearby chains