IL_3J2B_039

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

3J2B|1|N|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2B_039 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1503

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J2B|1|N|U|662
3J2B|1|N|A|663
3J2B|1|N|G|664
3J2B|1|N|A|665
3J2B|1|N|G|666
*
3J2B|1|N|U|740
3J2B|1|N|G|741
3J2B|1|N|G|742
3J2B|1|N|A|743

Current chains

Chain N

16S rRNA

Nearby chains