IL_3J2B_043

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2B_043 not in the Motif Atlas

Geometric match to IL_4LFB_033

Geometric discrepancy: 0.2142

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

3J2B|1|N|C|779
3J2B|1|N|A|780
3J2B|1|N|A|781
3J2B|1|N|A|782
3J2B|1|N|C|783
*
3J2B|1|N|G|799
3J2B|1|N|G|800
3J2B|1|N|U|801
3J2B|1|N|A|802
3J2B|1|N|G|803

Current chains

Chain N

16S rRNA

Nearby chains