IL_3J2B_045

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GGAGUACGG*UUAAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2B_045 not in the Motif Atlas

Homologous match to IL_6CZR_146

Geometric discrepancy: 0.3891

The information below is about IL_6CZR_146

Detailed Annotation

9x7 Sarcin-Ricin with inserted C; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_68633.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3J2B|1|N|G|887
3J2B|1|N|G|888
3J2B|1|N|A|889
3J2B|1|N|G|890
3J2B|1|N|U|891
3J2B|1|N|A|892
3J2B|1|N|C|893
3J2B|1|N|G|894
3J2B|1|N|G|895
*
3J2B|1|N|U|904
3J2B|1|N|U|905
3J2B|1|N|A|906
3J2B|1|N|A|907
3J2B|1|N|A|908
3J2B|1|N|A|909
3J2B|1|N|C|910

Current chains

Chain N

16S rRNA

Nearby chains