3D structure

PDB id
3J2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
13.6 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
3J2B|1|N|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J2B_048 not in the Motif Atlas
Homologous match to IL_4LFB_037
Geometric discrepancy: 0.4996
The information below is about IL_4LFB_037
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

3J2B|1|N|G|933
3J2B|1|N|C|934
3J2B|1|N|A|935
*
3J2B|1|N|U|1380
3J2B|1|N|U|1381
3J2B|1|N|C|1382
3J2B|1|N|C|1383
3J2B|1|N|C|1384

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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