3D structure

PDB id
3J2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
13.6 Å

Loop

Sequence
GUUGC*GAACUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J2B_060 not in the Motif Atlas
Homologous match to IL_5J7L_051
Geometric discrepancy: 0.2474
The information below is about IL_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

3J2B|1|N|G|1124
3J2B|1|N|U|1125
3J2B|1|N|U|1126
3J2B|1|N|G|1127
3J2B|1|N|C|1128
*
3J2B|1|N|G|1144
3J2B|1|N|A|1145
3J2B|1|N|A|1146
3J2B|1|N|C|1147
3J2B|1|N|U|1148
3J2B|1|N|C|1149

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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