IL_3J2C_035

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

3J2C|1|N|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2C_035 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2954

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

3J2C|1|N|G|147
3J2C|1|N|G|148
3J2C|1|N|A|149
3J2C|1|N|U|150
3J2C|1|N|A|151
3J2C|1|N|A|152
3J2C|1|N|C|153
*
3J2C|1|N|G|168
3J2C|1|N|C|169
3J2C|1|N|U|170
3J2C|1|N|A|171
3J2C|1|N|A|172
3J2C|1|N|U|173
3J2C|1|N|A|174
3J2C|1|N|C|175

Current chains

Chain N

16S rRNA body domain

Nearby chains

Chain O

Small subunit ribosomal RNA fragment; SSU rRNA fragment