IL_3J2C_037

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

3J2C|1|N|U|244, 3J2C|1|N|C|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2C_037 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.2145

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

3J2C|1|N|G|242
3J2C|1|N|A|243
3J2C|1|N|U|244
3J2C|1|N|U|245
3J2C|1|N|A|246
3J2C|1|N|G|247
*
3J2C|1|N|C|277
3J2C|1|N|G|278
3J2C|1|N|A|279
3J2C|1|N|C|280
3J2C|1|N|G|281
3J2C|1|N|A|282
3J2C|1|N|U|283
3J2C|1|N|C|284

Current chains

Chain N

16S rRNA body domain

Nearby chains

Chain O

Small subunit ribosomal RNA fragment; SSU rRNA fragment