IL_3J2C_065

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2C_065 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.4159

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

3J2C|1|N|G|887
3J2C|1|N|G|888
3J2C|1|N|A|889
3J2C|1|N|G|890
3J2C|1|N|U|891
3J2C|1|N|A|892
3J2C|1|N|C|893
3J2C|1|N|G|894
*
3J2C|1|N|U|905
3J2C|1|N|A|906
3J2C|1|N|A|907
3J2C|1|N|A|908
3J2C|1|N|A|909
3J2C|1|N|C|910

Current chains

Chain N

16S rRNA body domain

Nearby chains

Chain O

Small subunit ribosomal RNA fragment; SSU rRNA fragment