IL_3J2C_069

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2C_069 not in the Motif Atlas

Homologous match to IL_4LFB_059

Geometric discrepancy: 0.3902

The information below is about IL_4LFB_059

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J2C|1|O|C|1412
3J2C|1|O|A|1413
3J2C|1|O|U|1414
*
3J2C|1|O|G|1486
3J2C|1|O|G|1487
3J2C|1|O|G|1488

Current chains

Chain O

16S rRNA body domain

Nearby chains

Chain N

Small subunit ribosomal RNA; SSU rRNA