IL_3J2D_024

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2D_024 not in the Motif Atlas

Homologous match to IL_5J7L_021

Geometric discrepancy: 0.3326

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22248.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

2

Unit IDs

3J2D|1|N|C|440
3J2D|1|N|A|441
3J2D|1|N|G|442
*
3J2D|1|N|C|492
3J2D|1|N|A|493
3J2D|1|N|G|494
3J2D|1|N|A|495
3J2D|1|N|A|496
3J2D|1|N|G|497

Current chains

Chain N

16S rRNA

Nearby chains