IL_3J2D_042

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

3J2D|1|N|A|665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2D_042 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.3786

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3J2D|1|N|U|662
3J2D|1|N|A|663
3J2D|1|N|G|664
3J2D|1|N|A|665
3J2D|1|N|G|666
*
3J2D|1|N|U|740
3J2D|1|N|G|741
3J2D|1|N|G|742
3J2D|1|N|A|743

Current chains

Chain N

16S rRNA

Nearby chains