IL_3J2E_051

3D structure

PDB id

3J2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

15.3 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2E_051 not in the Motif Atlas

Homologous match to IL_5J7L_043

Geometric discrepancy: 0.271

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

3J2E|1|N|G|993
3J2E|1|N|A|994
3J2E|1|N|C|995
3J2E|1|N|A|996
3J2E|1|N|U|997
*
3J2E|1|N|A|1044
3J2E|1|N|C|1045

Current chains

Chain N

16S rRNA

Nearby chains