IL_3J2E_056

3D structure

PDB id

3J2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

15.3 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

3J2E|1|N|C|1200, 3J2E|1|N|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2E_056 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.1709

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

3J2E|1|N|G|1057
3J2E|1|N|G|1058
*
3J2E|1|N|U|1199
3J2E|1|N|C|1200
3J2E|1|N|A|1201
3J2E|1|N|U|1202
3J2E|1|N|C|1203

Current chains

Chain N

16S rRNA

Nearby chains