3D structure

PDB id
3J2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
17.6 Å

Loop

Sequence
CAG*CAUG
Length
7 nucleotides
Bulged bases
3J2F|1|N|A|397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J2F_003 not in the Motif Atlas
Geometric match to IL_4P3T_005
Geometric discrepancy: 0.2615
The information below is about IL_4P3T_005
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_10289.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
237

Unit IDs

3J2F|1|N|C|43
3J2F|1|N|A|44
3J2F|1|N|G|45
*
3J2F|1|N|C|396
3J2F|1|N|A|397
3J2F|1|N|U|398
3J2F|1|N|G|399

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1648 s